plot_snp_circos: Circos plot of SNP distribution across chromosomes

In almeidasilvaf/cageminer: Candidate Gene Miner

Circos plot of SNP distribution across chromosomes

Description

Circos plot of SNP distribution across chromosomes

Usage

plot_snp_circos(genome_ranges, gene_ranges, marker_ranges)

Arguments

genome_ranges	A GRanges object with chromosome lengths.
gene_ranges	A GRanges object with genomic coordinates of all genes in the genome.
marker_ranges	Genomic positions of SNPs. For a single trait, a GRanges object. For multiple traits, a GRangesList or CompressedGRangesList object, with each element of the list representing SNP positions for a particular trait.

Value

A ggplot object with a circos plot of molecular marker distribution across chromosomes.

Examples

data(snp_pos)
data(gene_ranges)
data(chr_length)
p <- plot_snp_circos(chr_length, gene_ranges, snp_pos)

almeidasilvaf/cageminer documentation built on Sept. 9, 2023, 5:18 p.m.