Man pages for alrobles/geotax
Tools for exploring taxonomic distance over the geographical space
| beetleTreeInteractions | Beetle tree interaction table. |
| get_bin_matrix | Generate a binary random matrix of ones and zeros with a... |
| get_incidence_matrix | Generate an incidence matrix from a interaction table |
| get_log_reg_coefficients | Logistic regression coeficients |
| get_taxonomical_tree | Create a taxonomic tree (cladogram) given a taxonomic table |
| host_points | Presence points of 50,000 tree genus. |
| host_points_mexico | Presence points of 3,200 bark beetle genus in Mexico. |
| host_points_sample | Presence points of 1,000 bark beetle genus. |
| host_tree | Pylogenetic tree example on geotax. |
| host_tree_prune | Pylogenetic tree example on geotax. |
| log_reg_boostrap | Logistic regression coeficients. Calculates the coefficients... |
| log_reg_coef | Logistic regression coeficients. Calculates the coefficients... |
| mexico | Shapefile of Mexico. |
| null_raster_point | Create a point matrix from from a shape file with an... |
| null_raster_polygon | Create a Spatial polygon Data Set from a shape file with an... |
| PAM | Create a Presence Absence Matrix |
| phy_dist | Phylogenetic distance matrix among host data on geotax |
| pipe | Pipe operator |
| prob_logit | Get probabilities from logistic regression coefficients. |
| tax_table | Taxonomical host data on geotax |
