exprMatrix: Expression data of two genes for 229 individuals

Description Usage Format Details Source Examples

Description

Toy dataset used in examples to describe affiXcanTrain() function.

Usage

1

Format

An object of class SummarizedExperiment.

Details

The data consist in a SummarizedExperiment object that contains a matrix of expression values (RPKM) of two randomly chosen genes ("ENSG00000139269.2" and "ENSG00000256377.1") for 229 individuals of european descent. The data was retrieved subsetting the RNA-sequencing data of EBV-transformed lymphocytes from the GEUVADIS public dataset (see 'source')

Source

https://www.ebi.ac.uk/arrayexpress/files/E-GEUV-3/

Examples

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library(SummarizedExperiment)
data(exprMatrix)
toyExpressionMatrix <- assays(exprMatrix)$values

alussana/AffiXcan documentation built on Oct. 20, 2020, 12:08 a.m.