geneIDs: get gene IDs from a ballgown object

In alyssafrazee/ballgown-release: Flexible, isoform-level differential expression analysis

Description

get gene IDs from a ballgown object

Usage

geneIDs(x)

## S4 method for signature 'ballgown'
geneIDs(x)

Arguments

x	a ballgown object

Details

This vector differs from that produced by geneNames in that geneIDs produces names of loci created during the assembly process, not necessarily annotated genes.

Value

named vector of gene IDs included in the ballgown object. If object was created using Tablemaker, these gene IDs will be of the form "XLOC_*". Vector is named and ordered by corresponding numeric transcript ID.

See Also

geneNames

Examples

data(bg)
geneIDs(bg)

alyssafrazee/ballgown-release documentation built on May 12, 2019, 1:40 a.m.