eexpr: extract exon-level expression measurements from ballgown...

In alyssafrazee/ballgown: Flexible, isoform-level differential expression analysis

Description

extract exon-level expression measurements from ballgown objects

Usage

eexpr(x, meas = "rcount")

## S4 method for signature 'ballgown'
eexpr(x, meas = "rcount")

Arguments

x	a ballgown object
meas	type of measurement to extract. Can be "rcount", "ucount", "mrcount", "cov", "mcov", or "all". Default "rcount".

Value

exon-by-sample matrix containing exon-level expression values (measured by meas). If meas is "all", or x@RSEM is TRUE, a data frame is returned, containing all measurements and location information.

Examples

data(bg)
exon_rcount_matrix = eexpr(bg)
exon_ucount_matrix = eexpr(bg, 'ucount')
exon_data_frame = eexpr(bg, 'all')

alyssafrazee/ballgown documentation built on Sept. 3, 2021, 7:15 p.m.