Man pages for amalthomas111/SBF
R package to compute Shared Basis Factorization (SBF)
| calcAvgCounts | Function to calculate mean expression values for each... |
| calcDecompError | Calculate decomposition error |
| calcNearestOrthoMatrix | Find the Nearest orthogonal matrix |
| calcPercentInfo | Compute information represented by each dimensions |
| computeUDelta | Compute U and Delta for a given set of matrices and a V |
| countToTpm | Calculate TPM normalization for a vector |
| createRandomMatrices | Generate random integer matrices with full column rank |
| getScientificName | Function to return scientific name of species |
| getSpeciesShortName | Function to create short name for species |
| GSVD | Compute GSVD factorization |
| HOGSVD | Compute HO GSVD factorization |
| invertDelta | Invert delta_i entries and return a matrix |
| normalizeTPM | TPM normalization for a gene expression matrix |
| optimizeFactorization | Function to minimize decomposition error |
| projectCounts | Function to project counts to the common expression space... |
| SBF | Compute Shared Basis Factorization (SBF) and Orthogonal... |
| TissueExprSpecies | Gene expression dataset of five tissues in three different... |
| updateDelta | Update Delta |
| updateU | Update U with orthonormal columns |
| updateV | Update V |
