genesee_skeleton: Initialize a Genesee project
In amcdavid/Genesee: Core functions for genomics project templating

genesee_skeleton

R Documentation

Initialize a Genesee project

Description

This creates a set of directories, activates renv, copies down templated shell scripts. The next step is to run make_sample_sheet.

Usage

genesee_skeleton(
  genesee_root,
  investigator,
  project_title,
  init_templates = TRUE,
  init_git = TRUE,
  use_renv = FALSE,
  project_type = "scRNA",
  authors = "default",
  force = FALSE,
  navigate_rawdata = TRUE
)

Arguments

`genesee_root`	`character` naming a containing all genesee projects
`investigator`	`character` naming PI of project
`project_title`	`character` naming project
`init_templates`	`logical` Should template markdown, shell scripts, etc, be copied?
`init_git`	`logical` should a git repo be initialized?
`use_renv`	`logical` Should renv be initialized?
`project_type`	`character`, one of `scRNA`, `RNA` or `scVDJ`
`authors`	`character` containing the authors/editors of the project
`force`	`logical` force creation of a project
`navigate_rawdata`	`logical` should we shift focus to the rstudio terminal opened on the rawdata directory