API for amcdavid/GeneseeBulk
Pipeline, analysis functions and markdown templates for bulk RNAseq
| Global functions | |
|---|---|
| .nebula_terms | Source code |
| DESeq2_tidiers | Man page |
| NebulaSE-class | Man page |
| add_gene_name | Source code |
| clamp | Source code |
| coerce | Man page |
| coerce,DESeqDataSet,NebulaSE-method | Man page |
| deseq_within | Source code |
| do_nebula_contrasts | Source code |
| drop_na | Source code |
| extract_re_var | Source code |
| gresults | Man page Source code |
| gresults.DESeqDataSet | Source code |
| gresults.NebulaSE | Man page Source code |
| gresults_names | Man page Source code |
| gresults_names.DESeqDataSet | Source code |
| gresults_names.NebulaSE | Man page |
| has_re | Man page Source code |
| modified_volc | Source code |
| plotLoadings | Source code |
| run_deseq_design | Man page Source code |
| run_glmm_nb_design | Man page Source code |
| run_nebula | Man page Source code |
| run_one_glmm | Source code |
| se_pca_plot | Man page Source code |
| se_sparsepca_plot | Source code |
| subset_dge | Source code |
| tidy,NebulaSE-method | Man page |
| tidy.DESeqTransform | Man page Source code |
| tidy.NebulaSE | Man page Source code |
| unrowname | Source code |
