Files in amf71/cloneMap
A Package to Construct Visual Representations of the Spatial Distribution of Somatic Clones in a Tissue / Sample
.Rbuildignore
DESCRIPTION
LICENCE
NAMESPACE
R/cloneMap.R
R/data.R
README.md
cran-comments.md
data-raw/.DS_Store
data-raw/create_example_inputs.R
data-raw/example_outputs/example_1.png
data-raw/example_outputs/example_2.png
data-raw/example_outputs/example_3.png
data-raw/example_outputs/example_4.png
data-raw/example_outputs/example_polyclonal.png
data-raw/example_outputs/example_polyclonal_border.png
data-raw/example_outputs/example_polyclonal_spaced.png
data-raw/paper_figures/data/Shah_ovarian_ccfs.rda
data-raw/paper_figures/data/Shah_ovarian_region_maps.rda
data-raw/paper_figures/data/Shah_ovarian_trees.rda
data-raw/paper_figures/data/Shah_ovarian_tumour_maps.rda
data-raw/paper_figures/data/TRACERX_lung_ccfs.rda
data-raw/paper_figures/data/TRACERX_lung_clinical_data.rda
data-raw/paper_figures/data/TRACERX_lung_trees.rda
data-raw/paper_figures/data/TRACERX_lung_tumour_maps.rda
data-raw/paper_figures/output_plots/Ovarian_3_regions.pdf
data-raw/paper_figures/output_plots/Ovarian_tumours.pdf
data-raw/paper_figures/output_plots/TRACERx100_GD.pdf
data-raw/paper_figures/output_plots/TRACERx100_Histology.pdf
data-raw/paper_figures/output_plots/TRACERx100_stage.pdf
data-raw/paper_figures/output_plots/complex_eg_CRU0079.pdf
data-raw/paper_figures/output_plots/complex_eg_CRU0094.pdf
data-raw/paper_figures/output_plots/ovarian_tumour_3.pdf
data-raw/paper_figures/public_data_examples.R
data-raw/testing/.DS_Store
data-raw/testing/test_Function.R
data-raw/testing/test_outputs/example_1.png
data-raw/testing/test_outputs/example_2.png
data-raw/testing/test_outputs/example_3.png
data-raw/testing/test_outputs/example_4.png
data-raw/testing/test_outputs/example_polyclonal.png
data-raw/testing/test_outputs/example_polyclonal_border.png
data-raw/testing/test_outputs/example_polyclonal_spaced.png
data/CCF_example_poly.rda
data/CCFs_example_1.rda
data/CCFs_example_2.rda
data/CCFs_simple_example.rda
data/clone_colours_example.rda
data/tree_example.rda
data/tree_example_1.rda
data/tree_example_2.rda
data/tree_example_poly.rda
man/CCF_example_poly.Rd
man/CCFs_example_1.Rd
man/CCFs_example_2.Rd
man/CCFs_simple_example.Rd
man/calc_clonal_diversity.Rd
man/cloneMap.Rd
man/clone_colours_example.Rd
man/extract_daughters.Rd
man/find_root.Rd
man/logically.order.tree.Rd
man/make.CCFs.tree.consistant.Rd
man/make_clone_col_input.Rd
man/remove.clones.on.tree.Rd
man/tree_example.Rd
man/tree_example_1.Rd
man/tree_example_2.Rd
man/tree_example_poly.Rd
