Man pages for amf71/cloneMap
A Package to Construct Visual Representations of the Spatial Distribution of Somatic Clones in a Tissue / Sample
| calc_clonal_diversity | function to calculate shannon or simpson diversity of clonal... |
| CCF_example_poly | A polyclonal example CCF table |
| CCFs_example_1 | The first example CCF table |
| CCFs_example_2 | The second example CCF table |
| CCFs_simple_example | The simple example CCF table |
| clone_colours_example | A example of input to specify clone colours |
| cloneMap | Construct clone maps |
| extract_daughters | function to extract all daughter clones from a parent using a... |
| find_root | function to find the root(s) in a phylogenetic tree |
| logically.order.tree | function to order tree root -> branches -> leaves |
| make.CCFs.tree.consistant | Function to correct CCFs when sum of daughter CCFs > parent... |
| make_clone_col_input | Function to create clone colour table with a RColourBrewer... |
| remove.clones.on.tree | function to remove clones from a phylogenetic tree matrix |
| tree_example | The a phylogenetic tree with all subclones in CCF examples 1... |
| tree_example_1 | The a phylogenetic tree with all subclones in CCF example 1 |
| tree_example_2 | The a phylogenetic tree with all subclones in CCF example 2 |
| tree_example_poly | The a phylogenetic tree with all subclones in a polyclonal... |
