get_diagnosis: Get a dataset with flags indicating if patient has a...

In aminyakubu/explorys:

Description

This function provides a dataframe with flags indicating if a patient has a diagnosis or not based on icd9, icd10 and snomed codes. The flags are 1 whichindicate patient had the medication or 0 which indicates patient did not. A missing flag means that the patient did not get any diagnosis at all in the time frame specified. All arguments are strings

Usage

get_diagnosis(supermart, sandbox, cohort, dx_codes_df, dx_codes_col,
  grouping_col, index_col, date_condition, extra_grouping_vars = "")

Arguments

supermart	Name of the supermart where the data is stored. Eg. supermart_392
sandbox	Name of the writable location usually sandbox where cohort is saved
cohort	Name of the cohort with explorys_patient_id's.
dx_codes_col	Name of the column in the dx_codes_df specified. This column has the icd9/10/snomed codes
grouping_col	Name of the column that has the groups of medications of interest
index_col	Name of the column with the index dates
date_condition	The sql format date condition. For example "DATE(diagnosis_date) BETWEEN '2019-01-01' AND '2020-01-01'"
extra_grouping_vars	Character string of additional variables separated by comma to grouping variables

Value

A dataframe with indicators of diagnoses

aminyakubu/explorys documentation built on Dec. 13, 2020, 4:40 a.m.