rarefy_mean: Rarefy mean

In amorris28/amorris: Andrew Morris' Misc Functions

Rarefy mean

Description

rarefy_mean rarefies a community matrix n times and averages the outcomes.

Usage

rarefy_mean(
  comm,
  sample = min(rowSums(comm)),
  n = 10,
  remove.singlets = TRUE,
  digits = FALSE
)

Arguments

comm	Community matrix
sample	Sample size to rarefy to based on the minimum row sum from the community matrix
n	Number of iterations to run rrarefy
remove.singlets	Boolean to determine whether to remove singletons
digits	Boolean to determine whether to include decimals

Value

matrix

amorris28/amorris documentation built on Nov. 24, 2022, 6:39 a.m.