lattice_peps_to_cand_groups: Turns the output of the lattice_peps function into a list of...

In amspector100/blipr: A Bayesian Linear Program for resolution-adaptive signal detection

Turns the output of the lattice_peps function into a list of list of candidate groups. Each sub-list corresponds to a list of completely disconnected candidate groups which can be fed to BLiP separately (this saves computation).

Description

Turns the output of the lattice_peps function into a list of list of candidate groups. Each sub-list corresponds to a list of completely disconnected candidate groups which can be fed to BLiP separately (this saves computation).

Usage

lattice_peps_to_cand_groups(
  filtered_peps,
  min_blip_size = 5000,
  verbose = F,
  shape = "square",
  max_pep = 1
)

Arguments

filtered_peps	An output of the lattice_peps function
min_blip_size	Combines connected components so all subproblems are at least this size.
verbose	If true, will give progress reports over time.
shape	One of 'square' or 'circle'.
max_pep	The maximum pep for candidate groups.

Value

A list of list of candidate groups.

amspector100/blipr documentation built on June 22, 2022, 2:43 a.m.