plot_pca: Time function

In amyh25/RFunctions: Some R Functions

Time function

Description

plot_pca Plots a pca with a specific coloring scheme. Also specifies the variance of each principal component.

Usage

plot_pca(
  pca_out,
  comp1,
  comp2,
  sep = NULL,
  col_index = NULL,
  str_extract_regex = NULL,
  col_label = ""
)

Arguments

pca_out	output of prcomp
comp1	integer value for PC on x-axis
comp2	integer value for PC on y-axis
sep	A string used for separating the sample name. Used with col_index
col_index	An index specifying a particular piece of the separated sample name string. Used with sep
str_extract_regex	A string specifying the regular expression to be extracted from the sample name for the color variable
col_label	The label of the color variable

Value

A ggplot of a pca

amyh25/RFunctions documentation built on Aug. 26, 2023, 4:33 p.m.