runHMM: Forward-backward for HMM estimates.

Description Usage Arguments Value

Description

Run forward-backward for the HMM on the data with hyperparameters fixed (emission densities fixed).

Usage

1
runHMM(emissions)

Arguments

emissions

The input data frame of emission densities for different test sites and 4 hidden states.

Value

The list of forward probabilites, backward probabilities, the number of forward-backward iterations, estimate of initial state probabilities and transition probabilities.


ananjysong/HMMdmdv documentation built on May 13, 2019, 5:33 p.m.