qqunif: qqunif

In anastasia-lucas/hudson: A mirrored Manhattan plot package

Description

Create qqplots with an assumed uniform distribution

Usage

qqunif(
  d,
  CI = 0.95,
  opacity = 1,
  groupcolors,
  splitby = NULL,
  highlight_p,
  highlight_name,
  annotate_p,
  annotate_name,
  highlighter = "red",
  line,
  slope = 1,
  background,
  title
)

Arguments

d	dataframe with at least one column, p-value; Color, Shape, and Name optional
CI	two-sided confidence interval, default 0.95
opacity	point opacity, default 1
groupcolors	named vector of colors corresponding to data in Group column
splitby	if data contains Color and/or Shape, indicate variable(s) by which the data should be subsetted for calculating CIs
highlight_p	p-value threshold to highlight
highlight_name	vector of names to highlight, dataframe must include a Name column
annotate_p	p-value threshold to annotate, dataframe must include a Name column
annotate_name	vector of names to annotate, dataframe must include a Name column
highlighter	highlighter color
line	draw a red line at pvalue threshold (observed)
slope	abline slope
background	can change to "white"
title	plot title

Value

ggplot object

anastasia-lucas/hudson documentation built on Nov. 18, 2021, 5:16 p.m.