agxgman: agxgman

In anastasia-lucas/nightlight: An 'omic Interaction Heatmap Package

Description

Create animated heatmap plots for SNPxSNP or GxG interaction Dependencies: ggplot2

Usage

agxgman(d, me, symmetric = TRUE, highlight_p = 0.05, legend = "p-value",
  title = NULL, high = "#02021e", low = "#1A0F99",
  highlight_high = "yellow", highlight_low = "#fffcd3", file = "agxgman",
  ext = "gif", hgt = 600, wi = 650)

Arguments

d	data frame, must contain SNP1, CHR1, POS1, SNP2, CHR2, POS2, pvalue, Frame (factor) columns
me	optional main effect data frame containing SNP, CHR, POS, pvalue, Frame (factor) columns, optional Shape
symmetric	boolean, should the plot be symmetric
highlight_p	threshold to diverge gradient color scale, default 0.05, set to "off" for no threshold
legend	title for color legend, default "p-value"
title	optional string for plot title
high	color for high values
low	color for low values
highlight_high	if highlight_p given, color for max of highlight range
highlight_low	if highlight_p given, color for min of highlight range
file	file name of saved image
ext	file extension "html" or "gif"
hgt	height of plot in pixels
wi	width of plot in pixels

Value

html or gif file

Examples

agxgman(d, me, symmetric, highlight_p, legend, title, high, low, highlight_high, highlight_low, file, hgt, wi)

anastasia-lucas/nightlight documentation built on May 14, 2019, 6:09 a.m.