Description Usage Arguments Value Examples
Create interactive qqplots with an assumed uniform distribution
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d |
dataframe with at least two columns, p-value and Name; Color, Shape, Info optional |
CI |
two-sided confidence interval, default 0.95 |
opacity |
point opacity, default 1 |
groupcolors |
named vector of colors corresponding to data in Group column |
splitby |
if data contains Color and/or Shape, indicate variable(s) by which the data should be subsetted for calculating CIs |
moreinfo |
includes more information on hover, refers to Info column |
db |
choose database to connect to ("dbSNP", "GWASCatalog", or enter your own search address) |
highlight_p |
p-value threshold to highlight |
highlight_name |
vector of names to highlight, dataframe must include a Name column |
annotate_p |
p-value threshold to annotate, dataframe must include a Name column |
annotate_name |
vector of names to annotate, dataframe must include a Name column |
highlighter |
highlighter color |
line |
draw a red line at pvalue threshold (observed) |
background |
can change to "white" |
title |
plot title |
bigrender |
can set to TRUE for big plots (~50000 rows) that produce huge input lookup error |
file |
filename |
wi |
width of plot |
hgt |
height of plot |
res |
resolution of plot |
html file
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