smoothed_fraction: function to calculate the fraction smoothed over nearest...
In anders-biostat/lcsc: Linked Charts for Single Cells
Description
function to calculate the fraction smoothed over nearest neighbors
Usage
1
smoothed_fraction(counts, marker, selection, nn_subset, gamma)
Arguments
counts
sparse matrix, containing counts (cols = cells, genes = rows)
marker
string, selected marker gene
selection
logical array, used to subset cells belonging to the selected sample
nn_subset
list, nearest neighbor indices and distances for cells in the sample
gamma
numeric, gamma-correction factor
anders-biostat/lcsc documentation built on Dec. 19, 2021, 2:34 a.m.
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Description
function to calculate the fraction smoothed over nearest neighbors
Usage
1 | smoothed_fraction(counts, marker, selection, nn_subset, gamma)
|
Arguments
counts |
sparse matrix, containing counts (cols = cells, genes = rows) |
marker |
string, selected marker gene |
selection |
logical array, used to subset cells belonging to the selected sample |
nn_subset |
list, nearest neighbor indices and distances for cells in the sample |
gamma |
numeric, gamma-correction factor |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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