get_node_support: Get node support from a tree produced with IQTREE
In andersgs/harrietr: Wrangle Phylogenetic Distance Matrices and Other Utilities
Description
Usage
Arguments
Value
Examples
Description
In IQTREE it is possible to obtain node support values by SH aproximate
likelihood ratio tests (SH-aLRT), and ultrafast bootstraps (uBS). Often,
we do both, which IQTREE encodes as two numbers separated by a '/' as the
internal node label. This function will return a data.frame with the
number of the internal nodes, and the support values for each.
Usage
1
get_node_support(tree)
Arguments
tree
An object of type phylo generated using IQTREE
Value
A data.frame with internal node information, plus two columns:
(1) SH-aLRT; and (2) uBS
Examples
1
2
3
4
5
## Not run:
data(woodmouse_iqtree)
get_node_support(woodmouse_iqtree)
## End(Not run)
andersgs/harrietr documentation built on May 12, 2019, 2:41 a.m.
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Description Usage Arguments Value Examples
Description
In IQTREE it is possible to obtain node support values by SH aproximate likelihood ratio tests (SH-aLRT), and ultrafast bootstraps (uBS). Often, we do both, which IQTREE encodes as two numbers separated by a '/' as the internal node label. This function will return a data.frame with the number of the internal nodes, and the support values for each.
Usage
1 | get_node_support(tree)
|
Arguments
tree |
An object of type phylo generated using IQTREE |
Value
A data.frame with internal node information, plus two columns: (1) SH-aLRT; and (2) uBS
Examples
1 2 3 4 5 | ## Not run:
data(woodmouse_iqtree)
get_node_support(woodmouse_iqtree)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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