wide_to_long_soma: reshape somascan table from wide to long

In andreagrioni/ToolViz: ToolViz

reshape somascan table from wide to long

Description

reshape somascan table from wide to long

Usage

wide_to_long_soma(
  data,
  x = NULL,
  y = NULL,
  target = NULL,
  annotation = NULL,
  group_ids = NULL,
  rows_by = NULL,
  cols_by = NULL,
  sample_id = "SampleId",
  spaghetti = NULL,
  colspaghetti = NULL
)

Arguments

data	tibble class object as sample X features.
x	x-axis value (def. aptamers).
y	y-axis value (def. rfu).
target	EntrezGeneSymbol or Aptamer SeqId.
annotation	Somascan Annotation Table.
group_ids	fill color of basic ggplot (aes) (def. NULL).
rows_by	facet_by row by feature (def. aptamers).
cols_by	facet_by col by feature (def. groups).
spaghetti	group samples by feature (allow spaghetti plot).
colspaghetti	color spaghetti line by feature (def. NULL).

Value

object tidy table long format

Examples

wide_to_long_soma(data=table,
annotation=anno, target='CXCL10',
x='time_idx', rows_by="aptamers",
cols_by='groups', spaghetti='SUBJID')

andreagrioni/ToolViz documentation built on Aug. 27, 2022, noon