dailyInterpretation: Estimation of daily mean abundances from long term monitoring...

In andreasnovotny/shaRk: shaRk: A tidyverse approach to Swedish natiolal monitoring data

Estimation of daily mean abundances from long term monitoring data

Description

Uses linear interpretation to calculate hypothetical abundances for all days during montoring perod.

Usage

dailyInterpretation(data, taxa = "Genus")

Arguments

data	(Required) A dataframe (of type Zooplankton or Phytoplankton?)
taxa	(Optional, default=Genus") A character string refering to the taxa-specific column in the dataframe

Value

Dataframe, with year summarized and daily abundances interpreted.

Examples

data <- getSHARK("Phytoplankton") %>%
   addDyntaxa() %>%
   annotateSHARK() %>%

 filter(Station == "BY31 LANDSORTSDJ",
        Year > 2006,
        unit == 	"mm3/l",
        Phylum %in% c(
                      "Miozoa",
                      "Bacillariophyta",
                      "Ciliophora",
                      "Haptophyta",
                      "Chlorophyta",
                      "Cyanobacteria"
  )) %>%

 group_by(SDATE, Phylum, Depth) %>%
 summarize(Value=sum(Value)) %>%

 group_by(SDATE, Phylum) %>%
 summarize(Value=mean(Value)) %>%

 dailyInterpretation(taxa="Phylum")

andreasnovotny/shaRk documentation built on Feb. 12, 2023, 7:06 p.m.