f_stat: Compute Reich's f-statistics
In andremrsantos/htspop: High-Troughput Sequencing Population Genetics Statistics
Description
Computes f2, f3, and f4 statistics unbiased estimateve used to measure
populations strutcture and treeness as described by
Reich et al. 2009.
The f-statistic are described the following statistics:
F4(W, X; Y,Z) = E[(W - X) * (Y - Z)]
F3(W; X, Y) = E[(W - X) * (W - Y)]
F2(X, Y) = E[(X - Y)^2]
Usage
1
2
3
4
5
Arguments
ac
A allele count matrix including the populations to investigate.
pops
A vector of populations to compute the statistic.
andremrsantos/htspop documentation built on May 14, 2020, 11:40 a.m.
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Description
Computes f2, f3, and f4 statistics unbiased estimateve used to measure populations strutcture and treeness as described by Reich et al. 2009. The f-statistic are described the following statistics:
F4(W, X; Y,Z) = E[(W - X) * (Y - Z)]
F3(W; X, Y) = E[(W - X) * (W - Y)]
F2(X, Y) = E[(X - Y)^2]
Usage
1 2 3 4 5 |
Arguments
ac |
A allele count matrix including the populations to investigate. |
pops |
A vector of populations to compute the statistic. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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