fdCBSfilterBySpByCell: cbs scenario filtering
In andrepazv/changeRangeR:

fdCBSfilterBySpByCell

R Documentation

cbs scenario filtering

Description

modify an output scenario based on binary species rasters to get a new scenario that supports a condition on species and cell charactristics

Usage

fdCBSfilterBySpByCell(
  cbsDir,
  scenario,
  suffixScenario,
  spAttrTable,
  spAttr,
  cellAttrTable,
  cellAttr,
  condition,
  NAfill = NULL,
  mc.cores = 1,
  useForeach = F,
  g = 10,
  verbose = T
)

Arguments

`cbsDir`	directory of cell by species matrix
`scenario`	name of the target scenario to modify
`suffixScenario`	suffix to be added to scenario for the output (the modified cbs)
`spAttrTable`	species attribute table
`spAttr`	character. The name of the field with the species attribute of interest
`cellAttrTable`	site (cell) attribute table
`cellAttr`	character. The name of the field with the species attribute of interest
`condition`	character. Logical condition to be used to compare spAttr to cellAttr
`NAfill`	numeric or NULL. Should NA in cellAttr or spAttr be filled with a number
`mc.cores`	numeric. Number of cores to be used.
`g`	numeric. Number of species chunks to process the data. Higher numbers imply less RAM utilization. Default to 10.

Value

saves a cbs file

Note

Mask cbs by a condition involving species characteristics and cell characteristcis. Example when you have a species that can't live near cities: input a species with a city tolorance and a table with cell urbanized