randomly_fix: Randomly correct aberrant digestion sites
In andrewGhazi/mpradesigntools: tools for designing MPRA experiments
View source: R/processVCFfast.R
Description
For a SNP with aberrant digestion sites in the context, randomly change bases
in the site across barcodes
Usage
1
randomly_fix(snp, res_df, dig_patterns, dig_site_locations)
Arguments
snp
a data_frame of one SNP
#' @param nper The number of barcoded sequences to be generated per allele per
SNP
upstreamContextRange
the amount of sequence context to acquire upstream of the SNP
downstreamContextRange
the amount of sequence context to acquire downstream of the SNP
fwprimer
a string containing the forward PCR primer to be used
revprimer
a string containing the reverse PCR primer to be used
andrewGhazi/mpradesigntools documentation built on Dec. 21, 2020, 3:18 p.m.
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View source: R/processVCFfast.R
Description
For a SNP with aberrant digestion sites in the context, randomly change bases in the site across barcodes
Usage
1 | randomly_fix(snp, res_df, dig_patterns, dig_site_locations)
|
Arguments
snp |
a data_frame of one SNP #' @param nper The number of barcoded sequences to be generated per allele per SNP |
upstreamContextRange |
the amount of sequence context to acquire upstream of the SNP |
downstreamContextRange |
the amount of sequence context to acquire downstream of the SNP |
fwprimer |
a string containing the forward PCR primer to be used |
revprimer |
a string containing the reverse PCR primer to be used |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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