Files in andrewdolman/baconr
Hierarchical Accumulation Modelling with Stan and R
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/rhub.yaml
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
DESCRIPTION
Docker/Dockerfile
NAMESPACE
NEWS.md
R/document-data.R
R/hamstr-package.R
R/make_stan_dat_hamstr.R
R/plot_stan_hamstr.R
R/posterior_methods.R
R/radiocarbon-functions.R
R/stan_hamstr.R
R/stanmodels.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
configure
configure.win
data-raw/MSB2K.csv
data-raw/import-example-data.R
data/MSB2K.rda
inst/include/stan_meta_header.hpp
inst/stan/hamstr.stan
inst/stan/include/license.stan
man/GetBrksHalfOffset.Rd
man/GetIndices.Rd
man/GetWts.Rd
man/MSB2K.Rd
man/SummariseEmpiricalPDF.Rd
man/add_datapoints.Rd
man/add_subdivisions.Rd
man/calibrate_14C_age.Rd
man/compare_14C_PDF.Rd
man/figures/README-first_alpha-1.svg
man/figures/README-plot_acc_mean-1.svg
man/figures/README-plot_acc_rates-1.svg
man/figures/README-plot_default-1.svg
man/figures/README-plot_hier_acc-1.svg
man/figures/README-plot_mem-1.svg
man/figures/README-plot_realisations-1.png
man/figures/README-stan_diags-1.svg
man/figures/README-t_approx_intcal-1.svg
man/figures/README-t_approx_marine-1.svg
man/figures/hex-hamstr-offset.png
man/figures/hex-hamstr-offset.svg
man/figures/hex-shiny-hamstr-offset.png
man/figures/hex-shiny-hamstr-offset.svg
man/filter_hamstr_acc_rates.Rd
man/gamma_sigma_shape.Rd
man/get_K_factor.Rd
man/get_inits_hamstr.Rd
man/get_obs_age_err.Rd
man/get_par_idx.Rd
man/get_posterior_acc_rates.Rd
man/get_posterior_ages.Rd
man/get_smooth_i.Rd
man/get_stan_sampler_args.Rd
man/hamstr-package.Rd
man/hamstr.Rd
man/hamstr_control.Rd
man/hierarchical_depths.Rd
man/interpolate_age_models.Rd
man/make_stan_dat_hamstr.Rd
man/plot.hamstr_fit.Rd
man/plot_acc_mean_prior_posterior.Rd
man/plot_age_models.Rd
man/plot_downcore_summary.Rd
man/plot_gamma_prior_posterior.Rd
man/plot_hamstr.Rd
man/plot_hamstr_acc_rates.Rd
man/plot_hierarchical_acc_rate.Rd
man/plot_infl_prior_posterior.Rd
man/plot_memory_prior_posterior.Rd
man/plot_prior_posterior_hist.Rd
man/plot_summary_age_models.Rd
man/predict.hamstr_fit.Rd
man/summarise_age_models.Rd
man/summarise_hamstr_acc_rates.Rd
man/summarise_hamstr_parameters.Rd
man/summarise_new_ages.Rd
man/summarise_q.Rd
man/summary.hamstr_fit.Rd
man/summary.hamstr_interpolated_ages.Rd
src/Makevars
src/Makevars.win
tests/testthat.R
tests/testthat/test-gamma.R
tests/testthat/test-stan_hamstr.R
vignettes/.gitignore
