read_nm_table: Read NONMEM table files produced from simulation.
In andrewhooker/xpose4: Diagnostics for Nonlinear Mixed-Effect Models

read_nm_table

R Documentation

Read NONMEM table files produced from simulation.

Description

The function reads in NONMEM table files produced from the $SIM line in a NONMEM model file.

Usage

read_nm_table(
  nm_table,
  only_obs = FALSE,
  method = "default",
  quiet = TRUE,
  sim_num = FALSE,
  sim_name = "NSIM"
)

Arguments

`nm_table`	The NONMEM table file to read. A text string.
`only_obs`	Should the non-observation lines in the data set be removed? Currently filtered using the expected `MDV` column. `TRUE` or `FALSE`.
`method`	The methods to use for reading the tables, Can be "readr_1", "readr_2", readr_3" or "slow".
`quiet`	Should the error message be verbose or not?
`sim_num`	Should a simulation number be added to simulation tables?
`sim_name`	What name should one use to name the column of the simulation number?

Details

Currently the function expects the $TABLE to have a header for each new simulation. This means that the NOHEADER option or ONEHEADER option in the table file is not allowed.

Value

Returns a data frame of the simulated table with an added column for the simulation number. The data frame is given class c("tbl_df", "tbl", "data.frame") for easy use with dplyr.

Other data functions: add_transformed_columns, change_graphical_parameters, change_misc_parameters, compute.cwres(), data.checkout(), data_extract_or_assign, db.names(), export.graph.par(), export.variable.definitions(), import.graph.par(), import.variable.definitions(), make.sb.data(), nsim(), par_cov_summary, read.TTE.sim.data(), read.nm.tables(), read_NM_output, simprazExample(), tabulate.parameters(), xlabel(), xpose.data, xpose.print(), xpose4-package, xsubset()