snpsloc: Artificial data for Matrix eQTL sample code: SNP location...
In andreyshabalin/MatrixEQTL: Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
snpsloc R Documentation
Artificial data for Matrix eQTL sample code: SNP location file.
Description
Artificial SNP location file for 15 markers.
snpid chr pos
Snp_01 chr1 721289
Snp_02 chr1 752565
... ... ...
Format
A data frame with 3 columns.
snpid-
A column with SNP names.
The order does not have to match the genotype data set.
chr-
Chromosome number, i.e. chr1.
pos-
Coordinate of the SNP.
Author(s)
Andrey A Shabalin andrey.shabalin@gmail.com
References
The package website:
http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/
See Also
See Matrix_eQTL_engine for reference and sample code.
andreyshabalin/MatrixEQTL documentation built on Oct. 1, 2023, 12:40 a.m.
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| snpsloc | R Documentation |
Artificial data for Matrix eQTL sample code: SNP location file.
Description
Artificial SNP location file for 15 markers.
| snpid | chr | pos |
| Snp_01 | chr1 | 721289 |
| Snp_02 | chr1 | 752565 |
| ... | ... | ... |
Format
A data frame with 3 columns.
snpid-
A column with SNP names. The order does not have to match the genotype data set.
chr-
Chromosome number, i.e. chr1.
pos-
Coordinate of the SNP.
Author(s)
Andrey A Shabalin andrey.shabalin@gmail.com
References
The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/
See Also
See Matrix_eQTL_engine for reference and sample code.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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