plot_fc: Plot functional connectivity matrix

In andy1764/FCHarmony: Functional Connectivity Harmonization

Plot functional connectivity matrix

Description

Function to create ggplots of either functional connectivity values or p-value matrices from functions such as test_regress

Usage

plot_fc(
  cov,
  lims = c(-max(abs(cov)), max(abs(cov))),
  subgraphs = dimnames(cov)[[1]],
  p.val = FALSE,
  p.method = "BH",
  alpha = 0.05,
  binary = FALSE,
  diag = FALSE,
  log.p = FALSE,
  starchar = "+",
  bin.param = list(color = "red", size = 2.5),
  rect.param = list(alpha = 0, size = 1.25)
)

Arguments

cov	Matrix of either functional connectivity values or derived p-values. Both covariance and correlation matrices are accepted.
lims	Lower and upper bounds to plot. Defaults to being
subgraphs	Vector of subgraph labels. Defaults to the input dimension names.
p.val	Are the elements p-values?
p.method	Method input to p.adjust. One of p.adjust.methods.
alpha	p-value threshold. If NULL, cutoffs are not plotted.
binary	Threshold the p-values based on specified threshold.
diag	Whether to plot diagonal elements.
log.p	Apply negative log-transformation to p-values, overridden by binary = TRUE.
starchar	Which character to use for annotating significant elements.
bin.param	List of graphical parameters passed to geom_text
rect.param	List of graphical parameters passed to geom_rect

andy1764/FCHarmony documentation built on April 4, 2022, 10:41 a.m.