get_trophic_level: Obtain trophic level data from rfishbase
In andybeet/indexPPR: Utilities to create ecosystem overfishing indices for the NEFSC State of the Ecosystem report
Description
Usage
Arguments
Value
View source: R/get_trophic_level.R
Description
The trophic level will be obtained for each scientific name provided.
Search will be in fishbase for vertibrates and sealifebase for invertibrates.
Two fields are accessed from the ecology table, FoodTroph and DietTroph.
See fishbase for more details (http://fishbase.us/manual/English/FishbaseThe_ECOLOGY_Table.htm)
Usage
1
get_trophic_level(lookupTable)
Arguments
lookupTable
dataframe. Any size. One column must be called SCIENTIFIC_NAME. Each row of the table will be cross referenced with fishbase
Value
Tibble. The same columns as lookupTable but with following additional columns.
genusSpecies
TRUE if species name is genus species, otherwise FALSE
DietTroph
Value from DietTroph field in fishbase ecology table
FoodTroph
Value from FoodTroph field in fishbase ecology table
vertibrate
TRUE if species found in fishbase, FALSE if found in sealifebase, NA if not found
andybeet/indexPPR documentation built on March 18, 2021, 12:33 p.m.
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Description Usage Arguments Value
View source: R/get_trophic_level.R
Description
The trophic level will be obtained for each scientific name provided. Search will be in fishbase for vertibrates and sealifebase for invertibrates. Two fields are accessed from the ecology table, FoodTroph and DietTroph. See fishbase for more details (http://fishbase.us/manual/English/FishbaseThe_ECOLOGY_Table.htm)
Usage
1 | get_trophic_level(lookupTable)
|
Arguments
lookupTable |
dataframe. Any size. One column must be called SCIENTIFIC_NAME. Each row of the table will be cross referenced with fishbase |
Value
Tibble. The same columns as lookupTable but with following additional columns.
genusSpecies |
TRUE if species name is genus species, otherwise FALSE |
DietTroph |
Value from DietTroph field in fishbase ecology table |
FoodTroph |
Value from FoodTroph field in fishbase ecology table |
vertibrate |
TRUE if species found in fishbase, FALSE if found in sealifebase, NA if not found |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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