randomize_top: Randomize the top window.
In angelesarzalluz/scfilters: A correlation-based method for quality filtering of single-cell RNAseq data
Description
Usage
Arguments
Details
Value
Description
Randomly sorts the values of each row of the supplied object.
Usage
1
randomize_top(dataset)
Arguments
dataset
A list containing the top window data frame as the first element.
Details
randomize_top generates the result of a single randomization. To create a consistent
negative control, this function should be called a sufficient number of times, using the
average of all randomizations as such.
Randomization takes place one row at a time, sorting the column values and returning the
randomized row to a newly created matrix. Since they are no longer relevant, due to the
sorting, column names are removed.
Important note: This function uses the output of extract_top_genes
as an input, or any list containing the top subset of genes as the first element. If that
is the case, it should be noted that it will be subset as $topgenes.
Value
A matrix containing a sample of randomized values of the top window.
angelesarzalluz/scfilters documentation built on May 10, 2019, 11:46 a.m.
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Description Usage Arguments Details Value
Description
Randomly sorts the values of each row of the supplied object.
Usage
1 | randomize_top(dataset)
|
Arguments
dataset |
A list containing the top window data frame as the first element. |
Details
randomize_top generates the result of a single randomization. To create a consistent
negative control, this function should be called a sufficient number of times, using the
average of all randomizations as such.
Randomization takes place one row at a time, sorting the column values and returning the randomized row to a newly created matrix. Since they are no longer relevant, due to the sorting, column names are removed.
Important note: This function uses the output of extract_top_genes
as an input, or any list containing the top subset of genes as the first element. If that
is the case, it should be noted that it will be subset as $topgenes.
Value
A matrix containing a sample of randomized values of the top window.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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