plot_MD_GE_graph: Create molecular descriptors and MoA features interaction...

Description Usage Arguments

View source: R/model_functions.R

Description

This function takes in input one row of the metrics matrix returned by the tqsar and hqsar functions and plot the interaction graph of genes and MDs

Usage

1
plot_MD_GE_graph(model_info, MDMat, GeneMat, neg_th = NULL, pos_th = NULL)

Arguments

model_info

is one row of the metrics matrix

MDMat

is the matrix of modelucalr descriptors

GeneMat

is the matrix of MOA features

neg_th

is a threshold that the user can set up to filter the graph from negative endges. If not null, the plot will contain only the edges with value lower that the neg_th quantile of the distribution of the negative edges weights

pos_th

is a threshold that the user can set up to filter the graph from negative endges. If not null, the plot will contain only the edges with value higher that the pos_th quantile of the distribution of the positive edges weights


angy89/hyQSAR documentation built on Sept. 24, 2019, 7:31 a.m.