| addComponent | Add a new component to a pipeline |
| addPipe | Add a pipe to a pipeline |
| amendSearchPaths | Amend search paths |
| calculateInputs | Returns a named list of input objects |
| calculateModuleOutputs | Calculate 'output' objects produced by a 'module' |
| calculateOutputs | Calculate ouput objects produced by a pipeline 'component' |
| command | Generate a system command to run a module's source scripts |
| component | Create a component object |
| componentPath | Calculate a component's output path |
| componentResult | Result of 'runModule' or 'runPipeline' |
| componentToXML | Convert a component to XML |
| dir.copy | Copy a directory and its contents |
| dockerHost | Create a 'dockerHost' object |
| endComponent | Return 'pipe' end component |
| endInput | Return 'pipe' end input |
| end.pipe | Return 'pipe' end list |
| execLanguage | Select execLanguage to store in 'moduleLanguage' object |
| executeCommand | Execute a 'command' list object |
| executeScript | Execute a prepared module script file. |
| expandSearchPaths | Expand a search path to an absolute path |
| export | Export OpenAPI objects |
| exportComponent | Export a component to an XML file |
| exportPipeline | Export a pipeline and its components to disk |
| extractModuleSource | Extract a module's source script |
| fetchVessel | Returns the contents of a resource referenced by a 'vessel'... |
| findFile | Find a file referenced by 'ref' and 'path' |
| getComponents | Extract components from object |
| getDescription | Extract object description |
| getExecLanguageVersion | Recovers module execution language information |
| getFormat | Retrieve object format |
| getLanguage | Retrieve object language |
| getLocation | Retrieve object location |
| getName | Extract object name |
| getPipes | Extract pipes from object |
| getRef | Retrieve object ref |
| getType | Retrieve object type |
| getValue | Retrieve object value |
| getVessel | Retrieve object vessel |
| getXMLAttr | Gets a named XML attribute if it exists |
| importModule | Import from a module archive |
| importPipeline | Import from a pipeline archive |
| input | Create an 'input' object for executing a 'component' in a... |
| internalExtension | Returns the correct file extension for a language's... |
| internalInputScript | Prepare script for internal inputs |
| internalOutputScript | prepare script to resolve internal output |
| ioFormat | Create an 'ioFormat' object. |
| ioFormatToXML | Create XML corresponding to an 'ioFormat' object |
| is_absolute | Tests if a file path is absolute |
| is_length1_char | Checks whether 'x' is a length 1 character vector |
| isValidXML | Check module and pipeline XML for validity |
| loadModule | Load a module from an XML file |
| loadPipeline | Load a pipeline from an XML file |
| module | Create a 'module' object |
| moduleHost | 'moduleHost' object |
| moduleHostToXML | Create XML corresponding to a 'moduleHost' object |
| moduleInput | Create a 'module' input |
| moduleInputHost | Create a 'moduleInputHost' object |
| moduleIO | Create a 'module' input or output object. |
| moduleIOToXML | Create XML corresponding to 'moduleIO' object |
| moduleLanguage | Create a 'moduleLanguage' object |
| moduleLanguageToXML | Create XML corresponding to 'moduleLanguage' object |
| moduleOutput | Create a 'module' output |
| moduleResult | Create 'moduleResult' object |
| moduleSource | Create a 'module' source |
| moduleSourceToXML | Create XML corresponding to 'moduleSource' object |
| moduleToXML | Convert a 'module' object to XML |
| output | return 'output' produced by a 'moduleOutput' |
| pipe | Creates a 'pipe' object |
| pipeline | Create a pipeline |
| pipelineResult | Create 'pipelineResult' object |
| pipelineToXML | Convert a pipeline to XML |
| pipesAsEdges | Get pipes as list of edges |
| pipeToXML | Convert a pipe to XML |
| prepareFileInput | Prepare file input object |
| prepareInput | Prepare input object |
| prepareInternalInput | Prepare internal input object. |
| prepareModuleHost | Prepare a module host for execution. |
| prepareScript | Prepare a script for executing a module in its language. |
| prepareScriptInit | Create initScript for module source execution |
| prepareScriptInput | Prepare script to create inputs |
| prepareScriptOutput | Prepare script to create outputs |
| prepareURLInput | Prepare URL input object |
| readComponentNode | Parse a component 'xmlNode' and return a 'component'. |
| readDockerHostXML | Create a 'dockerHost' object from <host><docker/></host> XML |
| readIOFormatXML | Create a 'ioFormat' object from format XML |
| readModuleHostXML | Create a 'moduleHost' object from host XML |
| readModuleInputHostXML | Create a 'moduleInputHost' object from... |
| readModuleIOXML | Create a 'moduleIO' object from input/output XML |
| readModuleLanguageXML | Create a 'moduleLanguage' object from language XML |
| readModuleSourceXML | create a 'moduleSource' object from module source XML |
| readModuleXML | Parse module XML and return a 'module' object |
| readPipelineXML | Parse pipeline XML and return a pipeline object |
| readPipeXML | Create 'pipe' object from pipe XML |
| readVagrantHostXML | Create a 'vagrantHost' object from <host><vagrant/></host>... |
| readVesselXML | Create a 'vessel' object from vessel XML |
| resolveOutput | Checks a module output object has been created. |
| resultComponent | Return a 'component' object for use in a 'pipelineResult'... |
| resultInput | Return a 'moduleInput' object for use in a 'moduleResult'... |
| resultOutput | Return a 'moduleOutput' object for use in a 'moduleResult'... |
| resultSource | Return a 'moduleSource' object for use in a 'moduleResult'... |
| retrieveModuleHost | Retrieve results of running a module's source scripts on a... |
| runComponent | Run a component |
| runModule | Execute a 'module"s source(s) |
| runPipeline | Run a pipeline |
| saveModule | Save a module to disk |
| savePipeline | Save a pipeline to disk |
| scriptExtension | Returns the correct file extension for a language's script... |
| searching | Information about file searching in 'conduit'. |
| sourceOrder | Determines running order for 'moduleSource's. |
| splitPaths | Split a search paths string separated by 'pathSep' |
| startComponent | Return 'pipe' start component |
| startOutput | Return 'pipe' start output |
| start.pipe | Return 'pipe' start list |
| topologicalSort | Do a topological sort on a graph |
| vagrantHost | Create a 'vagrantHost' object |
| validatePipe | Validate a pipe |
| validatePipeline | Validate all pipes in a pipeline |
| vessel | Functions to create 'vessel' objects. |
| vesselToXML | Create XML corresponding to a 'vessel' object. |
| warnLanguageVersion | Give warning if module execution violated moduleLanguage... |
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