README.md

scPy2R

Single-cell python packages for R

Installation

devtools::install_github("anirudhpatir/scrublet@main")

Current packages

  1. scrublet: adapted from scfurl

Scrublet

Input & output values

Input: count matrix, rows = genes, columns = cells. Output: list, predicted doublets with their scores from real and simulated data, as well as the threshold applied.

Usage

doublets = scrublet_R(count_matrix)

Citation

Wolock, Samuel L., Romain Lopez, and Allon M. Klein. "Scrublet: computational identification of cell doublets in single-cell transcriptomic data." Cell systems 8.4 (2019): 281-291.



anirudhpatir/scPy2R documentation built on Feb. 28, 2021, 7:42 a.m.