map_platform_to_cdf: Retrieve CDF Platform Name

In anjanbharadwaj/GEOpipeline: GEOpipeline: Streamlined Pipeline for Automatically CDF Normalizing Microarray Datasets

Description

This is a helper function that maps the GPl number to a CDF platform name on the BrainArray website.

Usage

map_platform_to_cdf(data, platform, accession_id, platform_id)

Arguments

data	GSE object from GEOquery
platform	GPL Platform Name
accession_id	Accession ID corresponding to GSE object
platform_id	GPL Platform Number

Value

expression	The normalized gene expression data
phenotype_data	The corresponding phenotype metadata for each of the samples in the gene expression data

Author(s)

Anjan Bharadwaj

Examples

##map_platform_to_cdf (data,"hgu133a", "11121","GPL570")

anjanbharadwaj/GEOpipeline documentation built on Nov. 2, 2019, 1:54 p.m.