match_ind_maf: Function to downsample independent SNPs to match MAF...
In annahutch/fcfdr: Flexible cFDR
Description
Usage
Arguments
Details
Value
View source: R/flexible_cfdr.R
Description
Matches MAF distribution of independent set of SNPs to MAF distribution of whole set of SNPs to avoid MAF-based confounding.
Usage
1
match_ind_maf(maf, indep_index)
Arguments
maf
minor allele frequencies of (all) SNPs
indep_index
indices of independent SNPs
Details
Must supply maf values from the whole data set, not just the independent SNPs.
Value
indices of independent SNP in chosen in sample
annahutch/fcfdr documentation built on Feb. 12, 2022, 6:49 a.m.
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Description Usage Arguments Details Value
View source: R/flexible_cfdr.R
Description
Matches MAF distribution of independent set of SNPs to MAF distribution of whole set of SNPs to avoid MAF-based confounding.
Usage
1 | match_ind_maf(maf, indep_index)
|
Arguments
maf |
minor allele frequencies of (all) SNPs |
indep_index |
indices of independent SNPs |
Details
Must supply maf values from the whole data set, not just the independent SNPs.
Value
indices of independent SNP in chosen in sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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