MurEpi.RNA.small: Example data set: Murine RNA-seq RPKM values of GSE77004

In annikabuerger/Cogito: Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Example data set: Murine RNA-seq RPKM values of GSE77004

Description

This murine data from King et al. was downloaded from the NCBI GEO database under accession number GSE77004.

The available RNA-seq RPKM values per gene from the same study, provided under the accession number GSE77003.

To reduce the storage size and complexity of the murine example data, the data only contains data of chr5 and four sample conditions (3x TFX and 1x mut) were removed.

Usage

MurEpi.RNA.small

Format

A GRanges Object containing a lot of Ranges with expression values scores.

Source

NCBI GEO database accession number GSE77003 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE77003

References

King AD, Huang K, Rubbi L, Liu S, Wang CY, Wang Y, Pellegrini M, Fan G. Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells. Cell Rep. 2016 Sep 27;17(1):289-302. doi: 10.1016/j.celrep.2016.08.083

annikabuerger/Cogito documentation built on July 7, 2022, 4:38 p.m.