Man pages for anoopshah/Rdiagnosislist
Manipulate SNOMED CT Diagnosis Lists
| acronyms | Extract acronyms stated in the description of SNOMED CT... |
| addComposeLookupToCDB | Add composition lookups to CDB |
| addInactiveConcepts | Add inactive concepts to a SNOMEDcodelist or SNOMEDconcept... |
| addWordnet | Use WordNet to assist concept database creation |
| attrConcept | Retrieve all attributes of a set of SNOMED CT concepts |
| batchDecompose | Creates a set of lookups for SNOMED composition |
| compose | Select more specific SNOMED CT concepts based on attributes |
| createCDB | Creates an environment containing CDB files |
| createSNOMEDindices | Create indices for tables in a SNOMED environment |
| createTransitive | Create a transitive closure table for is-a relationships for... |
| c.SNOMEDconcept | Concatenate vectors of SNOMED CT concepts |
| decompose | Decomposition of meaning of a finding or disorder SNOMED CT... |
| description | Obtain descriptions for a set of SNOMED CT terms |
| downloadOrphanet | Download Orphanet to assist with adding synonyms for rare... |
| downloadWordnet | Download WordNet to assist concept database creation |
| exclude_irrelevant_findings | Sample inclusion, exclusion and blacklist sets for a MiADE... |
| expandSNOMED | Expand or contract a SNOMEDcodelist |
| export | Export a SNOMEDcodelist |
| exportMiADECDB | Exports CDB files for MedCAT / MiADE |
| exportSNOMEDenvir | Export a SNOMED environment to a folder |
| getMaps | Obtain Read 2, CTV3, ICD-10 and OPCS4 maps for SNOMED CT... |
| getRefset | Retrieves a Refset from the REFSET table |
| getSNOMED | Retrieves SNOMED CT dictionary from the global environment |
| hasAttributes | Whether SNOMED CT concepts have particular attributes |
| HISTORY | Sample history substitution table from SNOMED CT dictionary |
| htmlCodelistHierarchy | Export a SNOMEDcodelist hierarchy to HTML |
| inactiveIncluded | Check if inactive terms are included in SNOMED CT dictionary |
| is.SNOMEDcodelist | Check if an object is a SNOMEDcodelist |
| is.SNOMEDconcept | Check if an object is a SNOMEDconcept |
| loadREADMAPS | Load mappings from Read to SNOMED CT into an R data.table |
| loadSNOMED | Load SNOMED CT files from a folder(s) into R data.table... |
| MANUAL_SYNONYMS | Sample manual synonym table to assist in creation of concept... |
| parents | Ancestors and descendants of SNOMED CT concepts |
| print.SNOMEDcodelist | Display a SNOMEDcodelist on screen |
| print.SNOMEDconcept | Display a SNOMEDconcept object with descriptions |
| print.SNOMEDfindings | Print method for output of 'decompose' function |
| QUERY | Sample query table from SNOMED CT dictionary |
| Rdiagnosislist-package | Rdiagnosislist: A package for manipulating SNOMED CT... |
| READMAPS | Sample mappings from Read to SNOMED CT |
| relatedConcepts | Obtain related concepts for a set of SNOMED CT concepts |
| sampleSNOMED | Sample SNOMED CT dictionary |
| semanticType | Retrieves semantic types using the text 'tag' in the... |
| simplify | Retrieves closest single ancestor within a given set of... |
| SNOMEDcodelist | Convert a data.frame to a SNOMEDcodelist object |
| SNOMEDconcept | Return the SNOMED CT concept IDs for a set of terms |
| SNOMED_CONCEPT | Sample concept table from SNOMED CT dictionary |
| SNOMED_DESCRIPTION | Sample description table from SNOMED CT dictionary |
| SNOMED_EXTENDEDMAP | Sample extended map table from SNOMED CT dictionary |
| SNOMED_REFSET | Sample refset table from SNOMED CT dictionary |
| SNOMED_RELATIONSHIP | Sample relationship tables from SNOMED CT dictionary |
| SNOMED_SIMPLEMAP | Sample SIMPLE map table from SNOMED CT dictionary |
| union.SNOMEDconcept | Set operations for SNOMEDconcept vectors |
| unique.SNOMEDconcept | Unique vector of SNOMED CT concepts |
