Files in antarctic-humpback-2019-assessment/HumpbackSIR
Use Sample-Importance-Resampling to Estimate Southern Humpback Abundance
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
HumpbackSIR.Rproj
NAMESPACE
R/RcppExports.R
R/control_specification.R
R/parameters.R
R/plot_sir.R
R/prior_specification.R
R/run_SIR.R
R/summary_stats.R
README.md
data-raw/.DS_Store
data-raw/Example/.DS_Store
data-raw/Example/2011_Zerbini/Zerbini_et_al_2011_IOA_fit.png
data-raw/Example/2011_Zerbini/Zerbini_et_al_2011_trajectory_summary.png
data-raw/old_data.R
data/Abs.Abundance.2005.rda
data/Catch.data.rda
data/Count.Data.rda
data/Rel.Abundance.rda
man/CALC.ANALYTIC.Q.Rd
man/CALC.LNLIKE.Rd
man/COMPUTING.ROI.Rd
man/GENERALIZED_LOGISTIC.Rd
man/HUMPBACK.SIR.Rd
man/LNLIKE.BEACHED.Rd
man/LNLIKE.GR.Rd
man/LNLIKE.IAs.Rd
man/LNLIKE.Ns.Rd
man/LOGISTIC.BISECTION.K.Rd
man/PRED.GROWTH.RATE.Rd
man/PREDICT.IAs.Rd
man/TARGET.K.Rd
man/bayes_factor.Rd
man/compare_posteriors.Rd
man/dlnorm_zerb.Rd
man/make_multiplier_list.Rd
man/make_prior.Rd
man/make_prior_list.Rd
man/plot_density.Rd
man/plot_ioa.Rd
man/plot_trajectory.Rd
man/rbest.Rd
man/rlunif.Rd
man/sir_control.Rd
man/summary_sir.Rd
man/weight_model.Rd
man/zerbini_table.Rd
src/.gitignore
src/GENERALIZED_LOGISTIC.cpp
src/RcppExports.cpp
src/ZERBINI_DLNORM.cpp
tests/testthat.R
tests/testthat/likelihood_calculation.R
tests/testthat/test_catch_multipliers.R
tests/testthat/test_control.R
tests/testthat/test_popdy.R
tests/testthat/test_prior_specification.R
tests/testthat/test_sir.R
