README.md

In anthony-aylward/nucband: Nucleosome banding scores for ATAC-seq datasets

nucband

Utility functions for calculating nucleosome banding scores from ATAC-seq data.

Adapted from Andrew Hill's R script, which contains methods used in Cusanovich et al.'s publication.

See this doc for an introduction to spectral analysis.

Installation

library(devtools)
install_github("anthony-aylward/nucband")

Example

Assuming insert_size is an integer vector of insert sizes:

library(nucband)
density <- insert_size_density(insert_size)
score <- nucleosome_banding_score(density)
log(score)

anthony-aylward/nucband documentation built on May 20, 2019, 11:41 a.m.