GeneDB3-class: An S4 class to represent the third database Gene.

In antoinepari/testRRiceTravis: testRRiceTravis package to make easier the study of the genomic of rice

Description

This gene is specific to the database 3 that is the database "Oryzabase". So it contains all the informations we can have about one gene with the "Oryzabase" database.

This constructor allows to create a GeneDB3 from the DB oryzabase.

Usage

GeneDB3(id, locus, traitGeneId, cgsnlGeneSymbol, GeneSymbolSynonim,
  cgsnlSymbolSynonim, GeneNameSynonim, proteinName, allele, chromosomeNumber,
  explanation, traitClass, rapID, grameneId, arm, locate, geneOntology,
  traitOntology, plantOntology)

Arguments

id	The id of the gene. Many genes can have the same id because there are the same in spite of the different attributes they have.
locus	The locus the gene belongs.
traitGeneId	id
cgsnlGeneSymbol	id
GeneSymbolSynonim	id
cgsnlSymbolSynonim	id
GeneNameSynonim	id
proteinName	id
allele	id
chromosomeNumber	id
explanation	id
traitClass	id
rapID	id
grameneId	id
arm	id
locate	id
geneOntology	id
traitOntology	id
plantOntology	id

Value

An Experiment

Slots

id

The id of the gene. Many genes can have the same id because there are the same in spite of the different attributes they have.

genesIDs

the list of diferent ids it have we will use with the databases.

locus

The locus the gene belongs.

others

The others attributes the user want to add or delete.

traitGeneId

id

cgsnlGeneSymbol

id

GeneSymbolSynonim

id

cgsnlSymbolSynonim

id

GeneNameSynonim

id

proteinName

id

allele

id

chromosomeNumber

id

explanation

id

traitClass

id

rapID

id

grameneId

id

arm

id

locate

id

geneOntology

id

traitOntology

id

plantOntology

id

antoinepari/testRRiceTravis documentation built on May 29, 2019, 2:10 p.m.