merge_metabosets: Merge MetaboSet objects together

In antonvsdata/notame: Workflow for non-targeted LC-MS metabolic profiling

Merge MetaboSet objects together

Description

Merges two or more MetaboSet objects together. Can be used to merge analytical modes or batches.

Usage

merge_metabosets(..., merge = c("features", "samples"))

Arguments

...	MetaboSet objects or a list of Metaboset objects
merge	what to merge? features is used for combining analytical modes, samples is used for batches

Details

When merging samples, sample IDs that beging with "QC" or "Ref" are combined so that they have running numbers on them. This means that if both bathces have samples called "QC_1", this will not result in an error, but the sample IDs will be adjusted so that they are unique

Value

A merged MetaboSet object

Examples

# Merge analytical modes
merged <- merge_metabosets(
  hilic_neg_sample, hilic_pos_sample,
  rp_neg_sample, rp_pos_sample
)
# Merge batches
batch1 <- merged_sample[, merged_sample$Batch == 1]
batch2 <- merged_sample[, merged_sample$Batch == 2]
merged <- merge_batches(batch1, batch2)

antonvsdata/notame documentation built on Sept. 14, 2024, 11:09 p.m.