Man pages for anttonalberdi/hilldiv
Integral Analysis of Diversity Based on Hill Numbers
| alpha_div | Alpha diversity |
| bat.diet.hierarchy | Bat diet hierarchy |
| bat.diet.otutable | Bat diet OTU table |
| bat.diet.tree | Bat diet OTU tree |
| beta_dis | Beta dissimilarity |
| copy_filt | OTU/ASV copy number filtering |
| CqN | Sørensen-type overlap |
| depth_cov | Depth coverage assessment |
| depth_filt | Sequencing depth filtering |
| dis_nmds | Dissimilarity NMDS plot |
| div_part | Multi-level diversity partitioning |
| div_profile | Diversity profile |
| div_profile_plot | Diversity profile plot |
| div_test | Diversity test |
| div_test_plot | Diversity test plotting |
| gamma_div | Gamma diversity |
| hill_div | Hill numbers computation |
| index_div | Diversity index computation |
| is.nested | Check if hierachy is nested |
| match_data | Match data |
| merge_samples | Merge samples |
| pair_dis | Pairwise dissimilarity |
| pair_dis_plot | Pairwise dissimilarity plot |
| SqN | Jaccard-type turnover-complement |
| to.incidence | Transform to incidence |
| to.occurrences | Transform abundance vector or matrix into occurrences |
| tree_depth | Tree depth |
| tss | Total Sum Scaling normalisation |
| UqN | Jaccard-type overlap |
| VqN | Sørensen-type turnover-complement |
