match_data: Match data
In anttonalberdi/hilldiv: Integral Analysis of Diversity Based on Hill Numbers

Description Usage Arguments Details Author(s) See Also Examples

Filter count tables and OTU/ASV phylogenetic trees to match OTUs/ASVs present in both data files..

1	match_data(countable, tree, output, silent)

`countable`	A count table (matrix/data.frame) indicating the absolute or relative OTU/ASV abundances of multiple samples. Columns must refer to samples and rows to OTUs/ASVs.
`tree`	An ultrametic tree of class 'phylo'.
`output`	Whether to output a filtered count table ('countable') or a filtered OTU tree ('tree'). Default is empty, which only yields a message.
`silent`	Whether to stop printing text on screen. Default=FALSE.

Match data

Antton Alberdi, anttonalberdi@gmail.com

hill_div, index_div

data(bat.diet.otutable)
data(bat.diet.tree)
match_data(bat.diet.otutable,bat.diet.tree,output="countable")
match_data(bat.diet.otutable,bat.diet.tree,output="tree")