html_document: Use Bioconductor style to format R Markdown HTML output
In aoles/BiocStyle: Standard styles for vignettes and other Bioconductor documents

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/html_document.R

Format for converting from R Markdown to an Bioconductor HTML document.

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html_document(toc = TRUE, number_sections = TRUE, fig_width = NA,
  fig_height = NA, self_contained = TRUE, css = NULL,
  pandoc_args = NULL, ..., titlecaps = TRUE)

`toc`	logical(1), `TRUE` to include a table of contents in the output
`number_sections`	logical(1), `TRUE` to number section headings
`fig_width`	numeric(1), default width (in inches) for figures
`fig_height`	numeric(1), default width (in inches) for figures
`self_contained`	numeric(1), `TRUE` to produce a standalone HTML file with no external dependencies, using data: URIs to incorporate the contents of linked scripts, stylesheets, images, and videos. Note that even for self contained documents MathJax is still loaded externally (this is necessary because of it's size).
`css`	character, one or more css files to include
`pandoc_args`	character, additional command line options to pass to pandoc
`...`	Additional arguments passed to `html_document`
`titlecaps`	logical(1), `TRUE` to use the emphasize the first sentence in figure and table captions as title

BiocStyle::html_document format extends the html_document format. See the online documentation and the package vignette "Authoring R Markdown Vignettes" for additional details on using the format,

R Markdown output format to pass to render

Andrzej Oleś <andrzej.oles@embl.de>, 2014-2017

pdf_document, md_document

## Not run: 

# simple invocation
render("input.Rmd", BiocStyle::html_document())

# specify options
render("input.Rmd", BiocStyle::html_document(toc = FALSE))

## End(Not run)