inst/Data.md

In appliedbinf/c19r-app: COVID-19 Event Risk Assessment Planning Tool

United States of America

Released: July 7, 2020

COVID19 data

Real-time COVID19 data comes from the COVID Tracking Project: https://covidtracking.com/api/

Real-time county level COVID19 data comes from the NYTimes COVID19 data project: https://github.com/nytimes/covid-19-data

Population data

US 2019 population estimate data comes from the US Census: https://www.census.gov/data/tables/time-series/demo/popest/2010s-state-total.html

Vaccination data

County-level vaccination coverage is collated by the Bansal lab at https://www.vaccinetracking.us/. We linearly interpolate between weekly values and merge county data to account for geographic exceptions in Alaska (Hoonah-Angoon plus Yakutat; Lake Peninsula plus Bristol Bay) and in New York City (New York, Kings, Queens, Bronx plus Richmond) following the New York Times dataset. Joint vaccination levels are computed for the City of Joplin, Jasper County, and Newton County, Missouri and for Kansas City, Jackson County, Clay County, Cass County, and Platte County, Missouri.

Merritt, Alexes; Tiu, Andrew; Bansal, Shweta, 2021, "Integrated US COVID-19 Vaccination Data", https://doi.org/10.7910/DVN/BFRIKI, Harvard Dataverse, V1.

Andrew Tiu, Zachary Susswein, Alexes Merritt, Shweta Bansal. Characterizing the spatiotemporal heterogeneity of the COVID-19 vaccination landscape. medRxiv. https://doi.org/10.1101/2021.10.04.21263345

United Kingdom

Released: October 5, 2020

The Coronavirus (COVID-19) in the UK API from Public Health England and NHSX: https://coronavirus.data.gov.uk

Italy

Released: October 5, 2020

Italian Department of Civil Protection COVID-19 Data: https://github.com/pcm-dpc/COVID-19/

Italian maps: http://datainterfaces.org/projects/covid19eventi/

Switzerland and Liechtenstein

Released: October 5, 2020

(from October 5, 2020 - December 19, 2021) Specialist Unit for Open Government Data Canton of Zurich COVID-19 data: https://github.com/openZH/covid_19 (from December 19, 2021): Federal Office of Public Health FOPH: https://www.covid19.admin.ch/en/overview

Austria

Released: October 19, 2020

Federal Ministry for Social Affairs, Health, Care and Consumer Protection (BMSGPK) data on COVID-19 for Austria: https://www.data.gv.at/covid-19/

France

Released: October 19, 2020

Santé publique France COVID-19 data for France : https://www.data.gouv.fr/fr/datasets/donnees-relatives-aux-resultats-des-tests-virologiques-covid-19/ Note this resource also contains data for overseas departments of France, and for Saint Barthélemy, Saint Martin, and Saint Pierre and Miquelon.

Czech Republic

Released: October 27, 2020

COVID-19 data sourced from National Health Information System, Regional Hygiene Stations, Ministry of Health of the Czech Republic and prepared by the Institute of Health Information and Statistics of the Czech Republic and the Institute of Biostatistics and Analyses, Faculty of Medicine, Masaryk University: https://onemocneni-aktualne.mzcr.cz/covid-19

Komenda M., Karolyi M., Bulhart V., Žofka J., Brauner T., Hak J., Jarkovský J., Mužík J., Blaha M., Kubát J., Klimeš D., Langhammer P., Daňková Š ., Májek O., Bartůňková M., Dušek L. COVID 19: Overview of the current situation in the Czech Republic. Disease currently [online]. Prague: Ministry of Health of the Czech Republic, 2020. Available from: https://onemocneni-aktualne.mzcr.cz/covid-19 . Development: joint workplace of IHIS CR and IBA LF MU. ISSN 2694-9423.

Ireland

Released: October 27, 2020

Data is provided by the Health Service Executive (HSE), Health Protection Surveillance Centre (HPSC), The Central Statistics Office (CSO) and Gov.ie and accessed via Ireland's COVID-19 Data Hub: https://covid19ireland-geohive.hub.arcgis.com/

Spain

Released: October 27, 2020

COVID-19 data from España Ministerio de Sanidad and Instituto de Salud Carlos III: https://cnecovid.isciii.es/covid19/

Denmark

Released: November 22, 2020

COVID-19 data from the Statens Serum Institut (SSI): - https://covid19.ssi.dk/overvagningsdata - https://experience.arcgis.com/experience/aa41b29149f24e20a4007a0c4e13db1d

Sweden

Released: November 22, 2020

Swedish COVID-19 National Statistics from Folkhälsomyndigheten: https://experience.arcgis.com/experience/09f821667ce64bf7be6f9f87457ed9aa/page/page_0/

Albania, Andorra, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Cyprus, Estonia, Finland, Germany, Greece, Hungary, Iceland, Israel, Latvia, Lithuania, Luxembourg, Malta, Moldova, Monaco, Montenegro, Netherlands, Norway, Poland, Portugal, Northern Macedonia, Romania, San Marino, Serbia, Slovakia, Slovenia, Turkey, Ukraine; and Gibraltar, Guernsey, Jersey, Isle of Man, Faroe Islands, Greenland

Released: December 19, 2021

We use data aggregated from local health resources in the WHO European Region COVID19 Subnational Explorer: https://experience.arcgis.com/experience/3a056fc8839d47969ef59949e9984a71

appliedbinf/c19r-app documentation built on April 27, 2023, 11:54 p.m.