API for arborworkflows/aRbor
An R package with useful functions for Arbor workflows
| Global functions | |
|---|---|
| .cont2color | Source code |
| .scale | Source code |
| aRbor | Man page |
| ace.treedata | Man page Source code |
| aceArborCalculator | Source code |
| anolis | Man page |
| bisseArbor | Man page Source code |
| bisseArborCalculator | Source code |
| branchPlus | Source code |
| checkFactor | Man page |
| checkNumeric | Man page Source code |
| combineDiscreteCharacters | Source code |
| continuousBlombergTest | Source code |
| continuousCorrelation | Man page Source code |
| continuousGarbageTest | Source code |
| continuousLambdaTest | Source code |
| discreteCorrelation | Man page Source code |
| discreteGarbageTest | Source code |
| discreteLambdaTest | Source code |
| fitDiscreteGarbageModel | Source code |
| getBisseMk2 | Source code |
| getBisseMk2Null | Source code |
| getDiscreteAceJoint | Source code |
| getDiscreteAceMCMC | Source code |
| getDiscreteAceMarginal | Source code |
| getDiscreteAceStochastic | Source code |
| makeDiscreteCorrelationConstraints | Source code |
| makeMkConstraints | Source code |
| phyloRegression | Source code |
| phyloSimulate | Source code |
| phylopcaArbor | Man page Source code |
| physigArbor | Man page Source code |
| physigArborCalculator | Source code |
| plot.asrArbor | Man page Source code |
| plotContAce | Source code |
| plotContrasts | Man page Source code |
| plotDiscreteReconstruction | Source code |
| predictMissingTips | Man page Source code |
| print.asrArbor | Man page Source code |
| print.physigArbor | Source code |
| root10 | Source code |
| validateASR | Man page Source code |
