physigArbor: Function for measuring phylogenetic signal in comparative...

In arborworkflows/aRbor: An R package with useful functions for Arbor workflows

Description

Function for measuring phylogenetic signal in comparative data

Usage

physigArbor(
  td,
  charType = "fromData",
  signalTest = "pagelLambda",
  discreteModelType = "ER",
  na.rm = "bytrait"
)

Arguments

td	A "treedata" object
charType	The type of data, one of: "continuous" Continuous "discrete" Discrete (Categorical) "fromData" Try to tell from data: see detectCharacterType
signalTest	The test to carry out. Options are "pagelLambda" Pagel's Lambda test "Blomberg" Blomberg's K "garbageTest" Garbage test (untested)
discreteModelType	Describes the discrete model. Options are "ER" Equal rates "SYM" Symmetric "ARD" All rates different
na.rm	How to deal with missing data. "bytrait" Drop species out trait-by-trait "all" Drop out species that have NAs for any trait

Value

An object of class physigArbor.

arborworkflows/aRbor documentation built on June 11, 2020, 7:44 p.m.