plotAUCConsistency: Function to plot the AUC consistency between the different...
In areyesq89/PharmPlotter: Template of an R package for students of the summer school Juriquilla 2017
Description
Usage
Arguments
Value
Examples
Description
plotAUCConsistency uses ggplot2 functions to plot a scatterplot of
AUC measurements in the CCLE project as a function of the AUC measurements of
the GDSC project. Based on this scatterplot, one can evaluate the consistency of
these measurements. If the data points are close to the f(x) = x line, it
would mean that the measurements are consistent between the different projects.
Usage
1
plotAUCConsistency(data, drugName)
Arguments
data
A data frame of summarized pharmacogenomic data with column names
"cellLine", "drug", "ic50_CCLE", "auc_CCLE","ic50_GDSC", "auc_GDSC".
drugName
A character vector containing the name of the drug to evaluate.
This value has to be contain in the "drug" column from the "data" data frame.
Value
A ggplot2 object
Examples
1
2
3
library(PharmPlotter)
data("summarizedData", package="PharmPlotter")
pl <- plotAUCConsistency( summarizedData, "AZD0530" )
areyesq89/PharmPlotter documentation built on May 29, 2019, 4:50 p.m.
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Description Usage Arguments Value Examples
Description
plotAUCConsistency uses ggplot2 functions to plot a scatterplot of
AUC measurements in the CCLE project as a function of the AUC measurements of
the GDSC project. Based on this scatterplot, one can evaluate the consistency of
these measurements. If the data points are close to the f(x) = x line, it
would mean that the measurements are consistent between the different projects.
Usage
1 | plotAUCConsistency(data, drugName)
|
Arguments
data |
A data frame of summarized pharmacogenomic data with column names "cellLine", "drug", "ic50_CCLE", "auc_CCLE","ic50_GDSC", "auc_GDSC". |
drugName |
A character vector containing the name of the drug to evaluate. This value has to be contain in the "drug" column from the "data" data frame. |
Value
A ggplot2 object
Examples
1 2 3 | library(PharmPlotter)
data("summarizedData", package="PharmPlotter")
pl <- plotAUCConsistency( summarizedData, "AZD0530" )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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