filter.exp: Pre-standardization filter to select miRNA expressed in a...
In aritronath/iMIRAGE: iMIRAGE: imputed miRNA activity from gene expression (Title Case)
Description
Usage
Arguments
Value
Examples
Description
return a subset of the miRNA expression dataset containing miRNAs that are expressed
in at least a specified percentage of samples based on a user-defined expression threshold
Usage
1
filter.exp(train_mir, cutoff = 75, threshold = 0)
Arguments
train_mir
an expression matrix with miRNA in columns, samples in rows
cutoff
percentage of samples in which the miRNA should be expressed
threshold
the numeric threshold defining expression of miRNA. Default threshold = 0.
Value
filtered miRNA expression matrix
Examples
1
New.mir <- filter.exp(GA.mir, cutoff=95, threshold=0)
aritronath/iMIRAGE documentation built on Dec. 29, 2019, 1:28 a.m.
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Description Usage Arguments Value Examples
Description
return a subset of the miRNA expression dataset containing miRNAs that are expressed in at least a specified percentage of samples based on a user-defined expression threshold
Usage
1 | filter.exp(train_mir, cutoff = 75, threshold = 0)
|
Arguments
train_mir |
an expression matrix with miRNA in columns, samples in rows |
cutoff |
percentage of samples in which the miRNA should be expressed |
threshold |
the numeric threshold defining expression of miRNA. Default threshold = 0. |
Value
filtered miRNA expression matrix
Examples
1 | New.mir <- filter.exp(GA.mir, cutoff=95, threshold=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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